miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|52501898|gb|CV248923.1|CV248923 TTTTTTTTTTTTTTTTGAACAGAATTTGACAAAATACATACTGGAGTATAAAGATGGAGACAAAATAATTACTTATAACC
AGAACAAATTCCTCTCGATGAGGCCTTAAAAATCCTCAAGCATAGCTTGATTTTATCCCCTTATTAGGTAACACATAGAT
TAACCAGCTAGGAAATAGTAGAATCAACATTCAAAAGACATTTGGATGTCCTGCACTCCAGAAACTACATAGTTGCATGA
AATTTAAGGGCACTTGGGCTTGTTTCCATGGGTCCTAAGGCTTGCATAACATGGGCATGCACTCTTGTTGCCATAGGTAC
CTGGTGGAACACACCGGCATCTGTTGCAGCAGGTTTTGCATGCTCTGTGGCATACATTCTTTCTTGACGATGCCCTGCAT
CTCCTTGCGCATAAATAACCACAATTGATTCTTTTAGGATAATGTTTCTTATCAATAGCTACCACATCGCTTTCTTCATC
CATATTAGCTGGAGAATTTGCAGCATTGCTAAGGAATGAATTCCCTACAAAAGCCTGAATGAGCAGGATGGAGATAAAAA
TCAAGAGTAGCTTCATCTTATGGCTAGCTCTGGTGAAGTGATAAGGTTGGTGAAGAGTAATACGAGAGA




Most similar to sp|P46689|GASA1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1
           OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2
          Length = 98

 Score =  107 bits (267), Expect = 6e-23
 Identities = 46/77 (59%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = -3

Query: 474 ESDVVAIDKKH-YPKRINCGYLCARRCRASSRKNVCHRACKTCCNRCRCVPPGTYGNKSA 298
           ++DV    KK+ Y K+I+CG  C  RCR S R  +CHRAC TCC RC CVPPGTYGN   
Sbjct: 22  QADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDK 81

Query: 297 CPCYASLRTHGNKPKCP 247
           C CYASL THG + KCP
Sbjct: 82  CQCYASLTTHGGRRKCP 98